DsTRD

DsTRD was built using 76,531 transcribed sequences assembled from 12 RNA-seq transcriptomes. The transcripts were annotated as protein-coding RNAs, long non-coding RNAs, microRNA precursors, and phased secondary small-interfering RNA genes through several bioinformatics methods. The tissue expression levels for each transcript were also calculated and presented in terms of RNA-Seq data. Overall, DsTRD facilitates browsing and searching for sequences and functional annotations of S. miltiorrhiza.DsTRD数据集由12个RNA-seq转录组组装得到的76531条转录序列构建而成。研究人员通过多种生物信息学手段，将该数据集涵盖的转录本注释为四类：蛋白编码RNA、长非编码RNA（long non-coding RNAs）、微小RNA前体以及相位型次级小干扰RNA（phased secondary small-interfering RNA）基因。此外，研究人员还基于RNA-seq数据计算并展示了每条转录本的组织表达水平。总体而言，DsTRD可为用户提供丹参(Salvia miltiorrhiza)的序列信息与功能注释的浏览及检索服务。

搜集汇总

背景与挑战

背景概述

DsTRD是一个基于12个RNA-seq转录组组装的76,531条转录序列构建的数据集。它通过生物信息学方法对转录本进行了功能注释，包括蛋白质编码RNA和非编码RNA等类别，并计算了组织表达水平。该数据集支持用户浏览和搜索丹参的序列及功能注释信息。