Independent Claude reviews of 7 E. coli genes and DeepECTF prediction assessments (VLDC recap, claude-expt-1)
收藏资源简介:
Agent-produced GO annotation reviews and DeepECTF (DeepECtransformer) enzyme-function prediction assessments for 7 Escherichia coli K-12 genes (fepE, yciO, yegV, ygfF, yjdM, yjhQ, yrhB), generated with Claude (Claude Code) as an evaluation experiment. The bundle contains: (1) genes/ECOLI/ with per-gene *-ai-review.yaml (GO annotation-by-annotation reviews + core functions) and *-det-predictions-review.yaml (structured assessments of the DeepECTF EC predictions using the COR/CNN/LSP/UNC/PLI/NPI/REP taxonomy), supporting bioinformatics, a summary, and a scrubbed/trimmed session transcript under session-logs/; (2) .claude/skills/, the skill definitions used by the agent. Integrity note: the DeepECTF prediction assessments were derived independently from UniProt/GOA, the DeepECTF paper, primary literature, and in-house bioinformatics. The de Crécy-Lagard et al. evaluation paper (the reference answer key) was withheld from the agent during the experiment and was not used as evidence.



