Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney-2)
收藏DataCite Commons2025-02-14 更新2025-04-16 收录
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https://janelia.figshare.com/articles/dataset/Refined_automatic_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_mouse_kidney_jrc_mus-kidney-2_/26506534
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资源简介：
<br><b>Segmentation description</b>: Nuclei segmentations in jrc_mus-kidney-2 using Cellpose 3.0.9 with cursory manual corrections.<b>Software</b>: Cellpose 3.0.9<b>Software DOI</b>: https://doi.org/10.1038/s41592-022-01663-4<b>Prediction Duration (seconds)</b>: 814.94<b>GPU</b>: NVIDIA TITAN RTX<b>RAM</b>: 251.0 GiB<b>Label voxel size (nm)</b>: 128 x 128 x 128 (x, y, z)<b>Reconstructed data dimensions (µm)</b>: 102.992 x 101.464 x 110.536 (X,Y,Z)<b>Classes annotated</b>: Nucleus<b>Source dataset (EM) ID</b>: jrc_mus-kidney-2<b>Source dataset (EM) voxel size (nm)</b>: 8.0 x 8.0 x 8.0 (X, Y, Z)<b>Source dataset (EM) data dimensions (µm)</b>: 102.992 x 101.464 x 110.536 (X,Y,Z)<b>Source dataset (EM) DOI</b>: https://doi.org/10.25378/janelia.23411009<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney-2/jrc_mus-kidney-2.zarr/recon-1/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney-2
提供机构：
Janelia Research Campus
创建时间：
2024-08-06
