De novo genome assemblies of Neurospora intermedia, N. metzenbergii and N. crassa, based on Illumina HiSeq reads
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https://figshare.com/articles/dataset/De_novo_genome_assemblies_of_Neurospora_intermedia_N_metzenbergii_and_N_crassa_based_on_Illumina_HiSeq_reads/6979925
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资源简介:
This dataset contains in total 29 de novo genome assemblies of three different species of the fungus Neurospora (21 N. intermedia, 5 N. metzenbergii and 3 N. crassa). All strains are listed using the strain number from the Fungal Genetics Stock Center (www.fgsc.net), where they also can be ordered from.
These genome assemblies were assembled from paired-end Illumina HiSeq 2500 reads using ABySS 1.3.7 in the following way:
abyss k=64 a=2 n=10 s=200 J016 in="read1.fastq.gz read2.fastq.gz" name="assembly_name"
Raw paired-end reads have been deposited in the Sequence Read Archive (SRA) in BioProjects PRJNA486257 (http://www.ncbi.nlm.nih.gov/bioproject/486257).
Strain list:
FGSC # | Species
-------+----------------------
1785 | Neurospora intermedia
1786 | Neurospora intermedia
1787 | Neurospora intermedia
1795 | Neurospora intermedia
1832 | Neurospora intermedia
1938 | Neurospora intermedia
2316 | Neurospora intermedia
2365 | Neurospora intermedia
3194 | Neurospora intermedia
5124 | Neurospora intermedia
6249 | Neurospora intermedia
6263 | Neurospora intermedia
6595 | Neurospora intermedia
7402 | Neurospora intermedia
7426 | Neurospora intermedia
7427 | Neurospora intermedia
7429 | Neurospora intermedia
8761 | Neurospora intermedia
8767 | Neurospora intermedia
8769 | Neurospora intermedia
8793 | Neurospora intermedia
5119 | Neurospora metzenbergii
6795 | Neurospora metzenbergii
8853 | Neurospora metzenbergii
10411 | Neurospora metzenbergii
P4149 | Neurospora metzenbergii
4723 | Neurospora crassa
4829 | Neurospora crassa
8863 | Neurospora crassa
For further information on the strains and the genome assemblies, please see:
Svedberg et al., (2018) "Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements": https://www.nature.com/articles/s41467-018-06562-x (DOI:10.1038/s41467-018-06562-x)
Supplementary Table 11 contains Illumina sequencing statistics.
创建时间:
2018-09-19



