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De novo genome assemblies of Neurospora intermedia, N. metzenbergii and N. crassa, based on Illumina HiSeq reads

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NIAID Data Ecosystem2026-03-10 收录
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https://figshare.com/articles/dataset/De_novo_genome_assemblies_of_Neurospora_intermedia_N_metzenbergii_and_N_crassa_based_on_Illumina_HiSeq_reads/6979925
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This dataset contains in total 29 de novo genome assemblies of three different species of the fungus Neurospora (21 N. intermedia, 5 N. metzenbergii and 3 N. crassa). All strains are listed using the strain number from the Fungal Genetics Stock Center (www.fgsc.net), where they also can be ordered from. These genome assemblies were assembled from paired-end Illumina HiSeq 2500 reads using ABySS 1.3.7 in the following way: abyss k=64 a=2 n=10 s=200 J016 in="read1.fastq.gz read2.fastq.gz" name="assembly_name" Raw paired-end reads have been deposited in the Sequence Read Archive (SRA) in BioProjects PRJNA486257 (http://www.ncbi.nlm.nih.gov/bioproject/486257). Strain list: FGSC # | Species -------+---------------------- 1785 | Neurospora intermedia 1786 | Neurospora intermedia 1787 | Neurospora intermedia 1795 | Neurospora intermedia 1832 | Neurospora intermedia 1938 | Neurospora intermedia 2316 | Neurospora intermedia 2365 | Neurospora intermedia 3194 | Neurospora intermedia 5124 | Neurospora intermedia 6249 | Neurospora intermedia 6263 | Neurospora intermedia 6595 | Neurospora intermedia 7402 | Neurospora intermedia 7426 | Neurospora intermedia 7427 | Neurospora intermedia 7429 | Neurospora intermedia 8761 | Neurospora intermedia 8767 | Neurospora intermedia 8769 | Neurospora intermedia 8793 | Neurospora intermedia 5119 | Neurospora metzenbergii 6795 | Neurospora metzenbergii 8853 | Neurospora metzenbergii 10411 | Neurospora metzenbergii P4149 | Neurospora metzenbergii 4723 | Neurospora crassa 4829 | Neurospora crassa 8863 | Neurospora crassa For further information on the strains and the genome assemblies, please see: Svedberg et al., (2018) "Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements": https://www.nature.com/articles/s41467-018-06562-x (DOI:10.1038/s41467-018-06562-x) Supplementary Table 11 contains Illumina sequencing statistics.
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2018-09-19
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