Additional file 1: of 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

S1. List of accessions used in this study. S2. SNP call pipelined used to identify genotypes in the 1k-RiCA. S3. List of 995 SNPs contained in the 1k-RiCA. S4. Hap-map formatted 1k-RiCA genotypic data on 283 lines used in the O. sativa PCA. S5. Hap-map formatted 1k-RiCA genotypic data on 431 lines used in the O. sativa ssp. indica diversity analysis. S6. Hap-map formatted 1k-RiCA genotypic data on 57 F1 lines and their parents used in the F1 analysis. S7. Hap-map formatted 1k-RiCA genotypic data on 353 lines used in the genomic selection cross-validation experiments. S8. Adjusted phenotypic means for FLW, GY, and PH on 353 lines used in the genomic selection cross-validation experiments. (XLSX 8888 kb)