Additional file 2: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

Performance of SNP variant callers with two methods of de novo reference construction. Tabular data shows how the number of SNP markers generated by SAMtools and HaplotypeCaller changed after elimination of the SNPs with 30% or more missing genotypes for each of the three marker categories possible with SNPs and informative for mapping in F1 of outcrossing parents. (XLSX 9Â kb)