Additional file 6 of Integrated single-cell transcriptomics of cerebrospinal fluid cells in treatment-naïve multiple sclerosis

Additional file 6: Table S2. Marker genes / differentially expressed genes_cell type level 1. (Table 2.1) Overview of marker genes and references used to annotate and specify the respective clusters. (Table 2.2–2.10) Depicted are the differentially expressed genes in each cluster compared to the remaining clusters of the cell type level 1 (marker genes). Listed for each gene is the Log fold change (log2-fold change), the p-value und the adjusted p-value (false discovery rate). We used the Welch’s t-test (cellxgene or diffxpy) for the discovery of differentially expressed genes between two groups of cells. A minimum of 10 cells in each group was required for calculation.