Classification of pathogen-specific sequence reads from symptomatic and non-symptomatic samples.

GRLaV = Grapevine redleaf-associated virus, GRSPaV = Grapevine rupestris stem pitting-associated virus, GFLV = Grapevine fanleaf virus, HpSVd = Hop stunt viroid, GYSVd-1 = Grapevine yellow speckle viroid 1, CEVd = Citrus exocortis viroid, CEYVd = Citrus exocortis Yucatan viroid.
*Reads mismapped to virus- or viroid-like sequences.
Classification and abundance of high-throughput sequence reads obtained from ribo-depleted and dual-depleted cDNA libraries were determined by mapping the reads onto the virus/viroid database using mapping software BWA 0.6.