Unique Junctions (Jct2) in DUP-TRP/INV-DUP rearrangements.

All DUP-TRP/INV-DUP rearrangements at Xq22.2 have an approximate triplication endpoint of ChrX:103223671 and distal duplication endpoint of ChrX:103324335, and all coordinates are with respect to hg19/GRCh37. The breakpoint junctions are detailed in S6 Fig. N/A stands for not applicable (there is no microhomology, inserted sequence, blunt junction, chimeric element, nor repetitive element with this breakpoint or at the specified side of the junction)
aMicrohomology at breakpoint is indicated with capital letters. Dashes indicate sequences surrounding the junctions, and … indicates either inserted sequences leading to two junctions or extended homology due to a chimeric element.
bInserted sequence/additional template switches at the breakpoint junctions. Small insertions are indicated in brackets (), whereas larger insertions are indicated with the coordinates of the inserted sequences and the strand (+ or-).
cRepetitive elements or low copy repeats (LCRs) present at the breakpoint junctions are indicated with the repeat name. // indicates the junction. Only P518 and BAB3698 contain junctions resulting in chimeric elements.
Unique Junctions (Jct2) in DUP-TRP/INV-DUP rearrangements.