Multi-omics dataset for microbiome and metabolome profiles from mulberry branch solid-state fermentation

This dataset contains integrated microbiome and metabolome data from a 12-day solid-state fermentation study of mulberry branch residue using mixed microbial cultures. The study aimed to optimize agricultural waste valorization for enhanced feed production through systematic bioprocessing. The microbiome data include the QIIME2 feature table (table.qza) containing microbial community abundance data and representative sequences (rep.fna) in FASTA format. The metabolomics data comprise processed abundance tables of 2,782 identified metabolites obtained from LC-MS analysis. All datasets are publicly accessible with persistent DOI identifiers and can be accessed at [DOI to be assigned upon publication]. The data are provided in standardized formats to facilitate reproducibility and integration with other studies. Sample identifiers in the repository correspond to the same identifiers used in the manuscript (G1, G2, G3 representing fermentation days 0, 6, and 12, respectively).