A new skipper butterfly from the Neotropical region and its genome (Lepidoptera: Hesperiidae: Eudaminae)

Genomic datasets for "A new skipper butterfly from Panama and Colombia with its genome (Lepidoptera: Hesperiidae: Eudaminae)" by Shinichi Nakahara, Yuttapong Thawornwattana, Trey J. Scott, Yeison Vega, Kevin Keegan, John V. Calhoun, John R. MacDonald and Albert Thurman 1) Mitochondrial genome data: mtgenome.tar.gz assembly: mitobim-assembly.fasta: raw assemblies of 26 genomes included in this study mem-specimens.fasta: cleaned assemblies of the five new specimens from this study mem-specimens-features.tsv: annotation for sequences in mem-specimens.fasta cds: 13 protein-coding genes of the five new specimens aln: concat.fasta: concatenated alignment of 13 protein-coding genes from 26 genomes tree: maximum likelihood tree inferred from IQ-TREE 2) Multilocus nuclear genome datasets: multilocus.tar.gz phocidini-s21: 26 genomes from 21 species multilocus_f50_filt: two multilocus datasets with different filters multilocus_f50_concat: concatenated nuclear genome datasets concat-ml-tree: maximum likelihood tree inferred from IQ-TREE phocidini-s14: 19 genomes from 14 species (main dataset) multilocus_f50_filt: two multilocus datasets with different filters + blocks of loci for blockwise species tree analysis multilocus_f50_filt_mem: same as above but only include loci that contain at least one MEM sample 3) BPP analysis files: bpp.tar.gz Control (ctl) files and species label (imap) files for BPP analysis of species tree topologies (a01) and parameter estimation of a given topology (a00).