Libraries of LTR-RTs from different tools

LTR libraries including the output from following tools: Inpactor2 LTR_harvest LTR_finder LTR_detector LTR_retriever FiLTR (referred to as HybridLTR in the file) For Inpactor2, LTR_harvest, LTR_finder, and LTR_detector, we first partition their intact LTR-RTs into terminal and internal sequences. We then use cd-hit-est with parameters -aS 0.95 -aL 0.95 -c 0.8 to generate consensus sequences. Since LTR_retriever and FiLTR can accept outputs from tools such as LTR_harvest, LTR_finder, and LtrDetector, as input, we have tested all kinds of input combinations.