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Genome assembly, repeat annotation, and gene models for Wahlenbergia ceracea

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Figshare2025-01-05 更新2026-04-28 收录
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https://figshare.com/articles/dataset/Supplementary_Data_of_Wahlenbergia_ceracea_genome_assembly_from_Notarnicola_et_al_2024/27890484
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Supplementary data files including genome assembly, repeat annotations (RepeatModeler), and gene models (BRAKER2) for Wahlenbergia ceracea.Description of filesGenome assemblywceracea_genome.fa: Raw genome assembly in FASTA format.wceracea_genome_filtered.fa: Genome assembly in FASTA format with junk contigs and alternative haplotigs removed.wceracea_genome_filtered_norepeat.fa: Genome assembly in FASTA format with junk contigs, alternative haplotigs, and repeat-rich contigs removed.Repeat Annotation (RepeatModeler and RepeatMasker)wceracea_genome_filtered.fa.cat.gz: Concatenated alignment file for identified repeats.wceracea_genome_filtered.repeat.out.fa: Repeat annotation file.wceracea_genome_filtered.masked.fa: Soft-masked genome assembly (junk contigs and alternative haplotigs removed).Gene Models (BRAKER)braker_wceracea.sorted.gtf: BRAKER gene predictions in GTF format, sorted by genomic coordinates.braker_wceracea.codingseq: Coding sequences of BRAKER-predicted genes in FASTA format.braker_wceracea.aa: Protein sequences for BRAKER-predicted genes in FASTA format.Kallisto resourcesbraker_wceracea.sorted.kallisto.idx: Kallisto index generated from BRAKER gene models for transcript quantification.import_kallisto_tximport.r: R script for importing transcript and gene abundances using tximport.
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2025-01-05
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