Chapter 4: VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
Python script to calculate ABBA BABA statistics, as well as pi and dXY from heliconius whole-genome data. It makes use of the EGGLIB library. Input was a "calls" format file, provided in Martin et al.
The research focuses on the genomic analysis of bacterial species adapted to the extreme conditions of the Sabkha, or salt flats, in Abu Dhabi. Sabkhas are characterized by high salinity, extreme temp
