Local synthetic datasets generation - manuscript data

Datasets generated under the work "Semantically Rich Local Dataset Generation for Explainable AI in Genomics".

Relevant files and directories:

      - datasets.tar.gz:  Full copy of the GitHub repository, except it contains the datasets generated in the manuscript.

The repo structure is organized as follows:

1_hyperparameter_search - Contains the Optuna output and the datasets generated from the top 5 trials of each strategy.

2_performanceComparison - Contains the datasets generated for the top trial of each strategy across more seeds.

3_ablation_studies - Directory with the output of all experiments that evaluated the impact of some hyperparameters on the evolutionary search.

4_generalization - Datasets generated from diverse input sequences.

data/cache - Fasta of the human genome along with transcript cache used to extract exon triplets.

figures.ipynb - Notebook to generate the manuscript figures.