AdditionalFile10.xlsx

This file is related to the study: "The wild sugarcane and sorghum kinomes: insights into expansion, diversification and expression patterns", which describes the catalog of kinase gene family in Saccharum spontaneum and Sorghum bicolor, providing a reservoir of molecular features and expression patterns based on RNA-Seq and co-expression networks.

Additional file 10Table S1. Organization of sorghum RNA-Seq experiments.Table S2. Organization of sugarcane RNA-Seq experiments.Table S3. Kinase domain annotation of the 1,210 sorghum protein kinases.Table S4. Kinase domain annotation of the 2,919 sugarcane protein kinases.Table S5. Subfamily kinase classification of the sorghum 1,210 kinases based on alignment on HMMER and confirmed by phylogeny.Table S6. Subfamily kinase classification of the sugarcane 2,919 kinases based on alignment on HMMER and confirmed by phylogeny.Table S7. Sorghum and sugarcane kinase subfamily quantifications.Table S8. Sorghum kinase distribution across chromosomes.Table S9. Sugarcane kinase distribution across chromosomes and alleles.Table S10. Localization, intron quantity and possible alternative splicing events of the 1,210 sorghum kinases.Table S11. Localization and intron quantity of the 2,919 sugarcane kinases.Table S12. Domain annotation of the 1,210 sorghum protein kinases.Table S13. Domain organization of the 1,210 sorghum protein kinases.Table S14. Sorghum kinase domain organization for proteins with multiple kinase domains.Table S15. Domain annotation of the 2,919 sugarcane protein kinases.Table S16. Domain organization of the 2,919 sugarcane protein kinases.Table S17. Sugarcane kinase domain organization for proteins with multiple kinase domains.Table S18. Gene Ontology (GO) annotations for the 1,210 sorghum kinases.Table S19. Gene Ontology (GO) annotations for the 2,919 sugarcane kinases.Table S20. Compositional analyses of the 1,210 sorghum kinases.Table S21. Compositional analyses of the 2,919 sugarcane kinases.Table S22. Characteristics of sorghum kinase subfamilies.Table S23. Characteristics of sugarcane kinase subfamilies.Table S24. Presence of domains across sorghum kinase subfamilies.Table S25. Presence of domains across sugarcane kinase subfamilies.Table S26. Duplication origin of the 1,210 sorghum kinases.Table S27. Duplication origin of the 2,919 sugarcane kinases.Table S28. Collinearity events and Ka/Ks values of sorghum protein kinases.Table S29. Collinearity events and Ka/Ks values of sugarcane protein kinases.