Additional file 4: Table S4. of The link between adjacent codon pairs and mRNA stability

Test for association of the out-of-frame inhibitory codon pairs with mRNA decay rate, protein abundance per mRNA, and ribosome occupancy. (A) Spearman’s correlation and partial correlation coefficients to assess associations between the fraction of the inhibitory codon pairs in the +1 frame and the gene expression variables. P values obtained according to Kim [16] and those based on permutation tests are shown. (B) Same as (A) but for Kendall’s correlation coefficients. (C) Same as (A) but for the presence/absence of the inhibitory codon pairs. (D) Same as (B) but for the presence/absence of the inhibitory codon pairs. (E) Same as (A) but for the +2 frame. (F) Same as (B) but for the +2 frame. (G) Same as (C) but for the +2 frame. (H) Same as (D) but for the +2 frame. (XLSX 57 kb)