Within-host samples of Mycobacterium tuberculosis.

Sample dates and resistance profiles are from the respective publications; sample timing is in reference to treatment initiation. Mean coverage of each sample reflects data passing all filters, with a minimum base quality score of 20. Treatment at the time of sampling is listed; only the first letters of drug abbreviations are capitalized. Resistance profile abbreviations: R = resistant; S = susceptible; blank = not reported; *indicates more details presented in the original paper. Drug abbreviations: INH (H), isoniazid; STR (S), streptomycin; RIF (R), rifampicin; EMB (E), ethambutol; PZA (Z), pyrazinamide; ETH, ethionamide; OFX, ofloxacin; CIP, ciprofloxacin; KAN, kanamycin; AMK, amikacin; PAS, para-aminosalicylic acid; CPR, capreomycin; D, Dipasic (isoniazid aminosalicylate); CS, Cycloserine; CFZ, clofazimine.Within-host samples of Mycobacterium tuberculosis.