Metagenomic multiple extended locus typing (MetaMELT) analysis of mNGS data for fungal meningitis outbreak investigation

Contents of this directory: Reference: Chiu, et al., 2024, Metagenomic locus typing identifies a likely point source exposure for a fungal meningitis outbreak caused by Fusarium solani 1. metaMELT_code_testdata - metaMELT scripting code and test data for Fusarium solani, LCMV, and MTB runs.2. metaMELT_paper_mNGS_reads - mNGS reads from patient samples3. metaMELT_paper_Fusarium_genome_scaffolds - 18 assembled Fusarium solani draft genomes (consisting of a series of contigs / scaffolds)