Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

Dataset to support manuscript with the same title. The submitted documents were obtained with the following procedures: For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters. Following, the 661 assembled were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Meyerozyma (Candida) guilliermondii, C. tropicalis, Debaryomyces hansenii, Eremothecium gossypii, Kluyveromyces lactis, Lodderomyces elongisporus, Scheffersomyces (Pichia) stipitis, Schizosaccharomyces pombe, and Yarrowia lipolytica; Basidiomycota – Cryptococcus neoformans, Coprinus, Laccaria bicolor, Phanerochaete chrysosporium and Ustilago maydis. Results were manually reviewed to select the most robust annotation in terms of predicted coding genes. The potential coding regions reported by AUGUSTUS were extracted from the complete genomes to FASTA files.