Full length sequence and classification for circRNAs downloaded from circRNAdb
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Here, the full length circRNA sequences and circRNA classification are given for the circRNAs downloaded from circbase, circRNAdb and plantcircbase database.The details for the annotation file and the reference genome are as follows: 1. <b>circbase and circRNAdb</b> The annotation file is downloaded from circRNAdb and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human). 2. <b>Arabidopsis thaliana</b> The reference genome and annotation file version TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 3. <b>Poncirus trifoliata </b> The reference genome and annotation file version Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant 4. <b>Glycine max</b> The reference genome and annotation file version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 5. <b>Gossypium arboreum</b> The reference genome and annotation file version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/ 6. <b>Gossypium hirsutum</b> The reference genome and annotation file version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1 7. <b>Gossypium raimondii</b> The reference genome and annotation file version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ 8. <b>Hordeum vulgare</b> The reference genome and annotation file version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 9. <b>Oryza sativa</b> The reference genome and annotation file version IRGSP-1.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 10. <b>Solanum lycopersicum</b> The reference genome and annotation file version SL2.50.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 11. <b>Solanum tuberosum</b> The reference genome and annotation file version SolTub_3.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/ 12. <b>Triticum aestivum</b> The reference genome and annotation file version IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/ 13. <b>Zea mays</b> The reference genome and annotation file version AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/<br>
提供机构:
Md. Tofazzal Hossain
创建时间:
2019-05-10



