遇见数据集

Transcript sequences of eight genes from Lobesia botrana (Supporting File S1 for "Reference gene choice alters estimated transcript regulation in the European grapevine moth after double-stranded RNA injection"

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Zenodo2026-09-30 更新2026-10-01 收录
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FASTA file with the nucleotide sequences of eight Lobesia botrana transcripts analysed in the associated manuscript: actin (ACT), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), ribosomal protein L7 (RPL7), arginine kinase (ARGKIN), elongation factor 1-alpha (EF1A), a fragment of a 60S ribosomal protein (60S), cytochrome c oxidase subunit I (COI) and ryanodine receptor (RyR). The sequences came from a de novo transcriptome assembled with rnaSPAdes v4.2.0 from public Sequence Read Archive reads of L. botrana larvae deposited by Geisenheim University (BioProject PRJNA910346, run SRR22586056), after trimming with Trimmomatic. All sequences are given in sense orientation. They are not deposited in GenBank because single-gene assemblies fall outside the scope of the TPA categories accepted by the database. The README describes each sequence, its coding region and its completeness.

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Zenodo
创建时间:
2026-09-30
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