Additional file 29 of Integrative multi-omic sequencing reveals the MMTV-Myc mouse model mimics human breast cancer heterogeneity

Additional file 29: Table S4. Integrative mouse gene set found by taking all genes that were differentially expressed between EMT, squamous, and microacinar histological subtypes that also had copy number differences present from the whole genome sequencing data. The rationale behind this is that if the MMTV-Myc histological subtype preferentially represent different human intrinsic breast cancer subtypes, the combination of genomic and transcriptomic data will limit the number of genes used in unsupervised hierarchical clustering to those that matter most.