Supporting Information S1 - Using Effective Subnetworks to Predict Selected Properties of Gene Networks

Tables showing (1) The set G of 299 genes chosen to study the oxygen deprivation network of E.coli. These genes have the common biological function 0006355 “regulation of transcription, DNA-dependent” (2) Mean values of the 299 genes in the wildtype and the mutants. (3) Standard deviation of 299 genes in the wildtype and mutants. (4) The coefficients of the Effective Empirical Network. (5) Comparison between the predicted and experimental gene expression levels for the double knockout of fnr and arcA. The experimental data are normalized by the corresponding mean value of the wildtype replicates (item (2)).
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