Additional file 1 of Comparative population genomic analysis uncovers novel genomic footprints and genes associated with small body size in Chinese pony

Additional file 1: Table S1. Sample information for each horse (86 individuals) used in this study. Table S2. Number of SNPs for each breed. Table S3. Positively selected genes (top %1) identified by Fst method. Table S4. Overrepresented GO categories among genes showing high Fst values in DBP. Table S5. Positively selected genes identified by top 1% highest log2 (θπ·DBP/θπ·THB). Table S6. Gene functional enrichment categories showing high log2(θπ·DBP/θπ·THB) values in DBP. Table S7. Positively selected genes identified (top%1) by XP-CLR method. Table S8. Gene functional enrichment categories showing high XP-CLR values.