D6 - Host-encoded plastid-associated proteins - Candidate trees

For each candidate, there are 3 files:

1) A fasta file of the candidate and the top hits from database searches (top 20 hits from blastp_nr mode, blastp_tsa_nr mode and SequenceServer 2.0.0 with the EukProt V3 database)

2) The alignment file of hits fasta file, having been aligned with MAFFT and trimmed with trimAL

3) The phylogenetic tree predicted by IQ-TREE for the alignment file (Used with ModelFInder to determine the best-fit model, 1000 ultrafast bootstrap replicates, and SH-aLRT test)

Each file name has the name of the protein, the co-assembly the candidate comes from, the node identifier, and protein number (multiple protein numbers are present when manual curation was required to rejoin exons)