Table_S3_summary_bacteria_sample_features

Key features of the bacterial samples. Plasmid_PPI indicates the number of plasmid-related PPIs; Chrom_PPI indicates the number of chromosomal PPIs; Fraction indicates the fraction of PPIs that were plasmid-related; inputProteins indicates the number of proteins per sample; interactions indicates the total number of PPIs; Plasmid_genes indicates the number of plasmid-related genes per sample; aPMNLE indicates the chromosomal proteins' aPMNLE; cTri indicates the number of chromosomal protein trios; loops indicates the number of indirect connections for chromosomal proteins; ccs indicates the number of connected components for chromosomal proteins; aPMNLE_all indicates the aPMNLE for all proteins; cTri_all indicates the number of protein trios; loops_all indicates the number of indirect connections; ccs_all indicates the number of connected components. Note some PMNLE values were not computational tractable and so the cells are empty.