The list of the most significant SNPs (FDR<25%) associated with cellular HIV-DNA levels during primary HIV-1 infection.

SNP is the rs number; Chr is the chromosome; Position is position along the chromosome (Human Genome NCBI Build 35.1); Q-values and P-values for the genome-wide association study with HIV-DNA in the Primo cohort are shown; Beta is the slope parameter (allele indicated in bracket is used as a reference group); MA is the minor allele in the HapMap CEU population; P-values for the comparison of allele frequencies between the PRIMO and HIV controllers patients (HIC) are shown. The four major SNPs are in bold.