CodiEsp Silver Standard: Participant predictions in eHealth CLEF2020 - Spanish clinical cases coded in ICD10 (CIE10)

Introduction

Predictions in the background set of eHealth CLEF 2020 Task 1 participants.

Zip structure

One directory per CodiEsp subtask. Within each CodiEsp subtask directory, there is one directory per team that contains the prediction runs.

Format
The text documents are distributed in plain text files, UTF-8 encoding.
The CodiEsp Silver Standard annotations have the following format:

For the sub-tracks CodiEsp-Diagnostic and CodiEsp-Procedure, the file files have the following fields:

articleID ICD10-code

Tab-separated files for the sub-track CodiEsp-X (explainability) contain extra fields that provide the text-reference and its position:

articleID label ICD10-code text-reference reference-position

Resources:

Web

Citation: Miranda-Escalada, A., Farré, E., & Krallinger, M. (2020). Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results. In Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings.

Gold Standard corpus

Annotation guidelines

YouTube presentations

Participant codes

All credit to CodiEsp participants