Additional file 2 of Whole-genome DNA methylomes of tree shrew brains reveal conserved and divergent roles of DNA methylation on sex chromosome regulation

Additional File 2: Table S2. Summary of the RNA-seq dataset and the number of expressed genes detected on individual chromosomes at various raw count thresholds. Table S3. List of DMRs. A list of differentially methylated regions (DMRs) between female and male tree shrews, detected by DSS. The associated gene and the distance between the TSS and the DMR are provided. Table S4. List of DEGs (Autosome). A list of sex-specific differentially expressed genes (DEGs) between female and male tree shrews on autosomes, generated from DESeq2 outputs. Table S5. List of DEGs (ChrX). A list of sex-specific differentially expressed genes (DEGs) between female and male tree shrews on the X chromosome, generated from DESeq2 outputs. Table S6. List of contigs and their associated chromosomal information. Read depth for females and males and DNA methylation levels are calculated, and GC content is included.