TCGA ABSOLUTE auto-calling results with DoAbsolute

The results are calculated with DoAbsolute (https://github.com/ShixiangWang/DoAbsolute) with cancer type specific and pan-cancer mode based on TCGA copy number segments data and mutation data. Take your own risk as the data are auto-processed and no manual check.

array    sample    call status    purity    ploidy    Genome doublings    delta    Coverage for 80% power    Cancer DNA fraction    Subclonal genome fraction    tau    E_CR
TCGA-OR-A5JO-01    TCGA-OR-A5JO-01    called    1    5    0    0.2    21    1    0.01    5.00281122783359    0
TCGA-OR-A5KQ-10    TCGA-OR-A5KQ-10    called    0.69    5    0    0.17    29    0.85    0    4.99022535717521    0
TCGA-OR-A5L8-10    TCGA-OR-A5L8-10    called    0.56    3.99    0    0.18    27    0.72    0    4.02086049427876    0
TCGA-OU-A5PI-10    TCGA-OU-A5PI-10    called    0.75    5    0    0.18    28    0.88    0.01    5.01366221195135    0

Please cite the following paper if you use it in academic research:

Wang, Shixiang, et al. "The predictive power of tumor mutational burden in lung cancer immunotherapy response is influenced by patients' sex." International journal of cancer (2019).

Carter, Scott L., et al. “Absolute quantification of somatic DNA alterations in human cancer.” Nature biotechnology 30.5 (2012): 413.