Additional file 1 of Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations

Additional file 1: Supplementary table 1. Information on the seven high quality genomes of the Podospora anserina species complex. Supplementary Table 2. Transposable element abundances in the Podospora anserina species-complex based on the RepeatMasker [49] output of the Podospora repeat library [41]. Supplementary table 3. Information on the sequences classified by the sequence similarity network with communitiesdetected by  the GMC algorithm in the python package NetworkX [68-70]. Shown are the number of full and active copies in each community, the final classifiaction names used in this study and in the updated repeat library, and the best hit to the old library LTR sequences. Supplementary table 4. Misclassifications between SSN and RepeatMasker [49] and the number of copies of respective misclassification.