Single nucleus multiome (RNAseq and ATACseq) of male mouse pituitary
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https://www.ncbi.nlm.nih.gov/sra/SRP443536
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资源简介:
We report the single nucleus multiome (RNAseq+ATACseq) of a male mouse pituitary sample. This dataset was generated for supporting the development of a novel computational framework for analyzing gene regulatorty circuitry from single cell multiome datasets. This computational framework extract regulatory circuits consisting of TFs, cis-regulatory sites and target genes by modelling the co-incidence of the RNA levels of the TFs, the chomatin accessibility of the TFs' binding sites and the RNA levels of target genes across single cell. Specifically we identified gonadotrope-specific regulatory circuits under the transcription factor Gata2. These regulatory circuits were validated by male mouse pituitary samples with gonadotrope-conditional knockout of Gata2 previously reported in GSE190066. Overall design: Single nucleus true multiome (RNAseq and ATACseq) of the pituitary tissue of a male mouse.
创建时间:
2023-12-14



