SNPs with cell-type-specific AEI associated with HbA1c in the Fadista data when the Baron data were used as reference.

We applied BSCET to the Fadista pancreatic islets bulk RNA-seq data [15] using the MuSiC [14] proportion estimates obtained from the Baron single-cell reference [12]. We detected 5 SNPs in 4 genes with cell-type-specific AEI significantly associated with HbA1c (FDR adjusted P-value < 0.05), with the direction of the association indicated in column ‘Correlation’.
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