Easy BAM files from practising RNA-seq and exome-seq visualization

Two sets of small BAM files for practising RNA-seq and WES visualization (human) 

All data was processed from open access SRA datasets. 

Description:

NAME
RNA-EMT
WES-LUNG

SOURCE
Yang et al. https://doi.org/10.1128/mcb.00019-16, SRA: PRJNA304419
Ju et al. https://doi.org/10.1101/gr.133645.111; SRA: ERP001071)

DESCRIPTION
Human RNA-seq BAM files 
Human WES BAM files: Lung cancer

SEQUENCING TYPE
Illumina paired-end, stranded
Illumina paired-end

METHODS
Original data are from cell lines subjected to epthithelium-mesenchymal transition. We took replicates corresponding to Day 0 (uninduced cells) and Day 7 (7 days after induction). Reads were aligned with STAR. BAM files are restricted to chromosome 18. Gene of interest: CDH2, up in mesenchymal state.
WES were obtained from tumor and blood tissues from a non small cell lung cancer patient. Reads were aligned with BWA. A fraction of sequences corresponding to a panel of genes were retained. Genes of interest: DUSP27, KRAS

MAPPED_TO
HG19
HG19

SAMPLING RATE
0.50%
0.10%

FILE SIZE
2*40Mb
2*7Mb