Plotting a future for Amazonian canga vegetation in a campo rupestre context - Supplementary data

These are the supplementary data for our study on biogeography and conservation of the flora of campo rupestre vegetation in Brazil. We compared the differences in plant species composition and lineage distribution of campos rupestres in the Amazonian Carajás (Pará state) and easter Brazil (Minas Gerais and Bahia states). The study is published in the journal Plos One. The supplementary data is described as follow:S1 Fig shows the flow chart of methods used in our analyses. Red symbols represent the sites with canga substrate (inedited database produced for this paper). Blue symbols represent sites with quartzite substrate and lilac symbol sites with mixed substrate (both canga and quartzite), produced for Zappi et al (2017) paper (https://doi.org/10.3389/fpls.2017.02141).S2 Fig shows the SOS values for our sites. SOS values express clades with differential over-representation of certain lineages in a set of sites, versus lineages with over-representation elsewhere (see Borregaard et al. 2014). This analysis was made with 'nodiv' R package (https://doi.org/10.1111/2041-210X.12283).S3 Fig is the graph with the results of the rarefaction, extrapolation and Angiosperm species richness estimation of campo rupestre in Carajás. These analyses were made on software EstimateS (https://doi.org/10.1111/ecog.00814)S4 Fig brings the phylogenetic tree of all species from the campos rupestres in both Carajás and Espinhaço range in PDF format. This tree was generate in iTol (https://itol.embl.de) using the S2 Text file available here.S1 Text is the script used for all analyses done in R environment (note that some analyses were made in different software like Phylocom and EstimateS, as described in the paper).S2 Text is the dated phylogenetic tree showing evolutive relationships between all species present in our database. This tree was created in the software Phylocom based on the megatree 'R20160415.new', which is provided by Gastauer and Meira-Neto (2017) in their datapaper (https://doi.org/10.1590/0102-33062016abb0306).S1 Table contains the data matrix showing the presence of plant species in each of the 14 individual sites on mountaintops in Carajás (Pará state), which was used in the multivariate analysis, rarefaction and richness estimation for the area.S2 Table contains the data matrix showing the presence of plant species for each of the 14 Carajás sites plus the 14 sites of campo rupestre of easter Brazil (Minas Gerais and Bahia states - see Zappi et al. 2017 paper), which was used in the biogeographical comparison at national level.S3 Table brings the raw results of the rarefaction, extrapolation and species richness estimation of campo rupestre in Carajás. These analyses were made on software EstimateS (https://doi.org/10.1111/ecog.00814).