RNA-seq of Arabidopsis thaliana seedlings exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]

This study evaluates the transcriptome of Arabidopsis thaliana seedlings exposed to the MAMP flg22 in the presence of 35 different bacteria Overall design: Arabidopsis seeds (wild-type Col-0) were germinated on Johnson medium and grown for 7 days in the vertical position. Plants were then transferred to media containing 1 uM flg22 or not in the presence of a commensal bacteria strain (10E5 c.f.u / mL). Plants were grown in a growth chamber in a 15-h dark/9-h light regime (21°C day /18°C night). Whole seedlings were harvested twelve days after treatment. The experiment includes nine biological replicates from three independent experiments.