Genomic approaches reveal an endemic sub-population of gray wolves in Southern China

Though gray wolves (Canis lupus) are one of the most widely distributed terrestrial mammals, their origins in China are not well understood, as their habitats have been destroyed with growing economic development. Using six specimens from wolf skins in natural history museums in China, we sequenced their genomes using a modified ancient DNA procedure. Using whole genome sequence analysis, we showed that gray wolves from Southern China (SC) derive from a single lineage, distinct from gray wolves from the Tibetan Plateau (Canis lupus chanco) and Northern China, suggesting that SC gray wolves may form a distinct sub-population. Of SC gray wolves, one wolf from Zhejiang carries a genetic component from a canid that must have diverged earlier from other wolves than jackals did, perhaps through gene flow from a population related to or further diverged from wolves than the dhole, a species distributed in Southern China and Southeast Asia. This may indicate that interspecific gene flow likely played an important role in shaping the speciation patterns and population structure in the genus Canis. Our study is the first to survey museum gray wolves' genomes from Southern China, revealing the presence of an endemic population with ancient interspecific gene flow from a population related to the dhole, and highlighting how sequencing the paleogenome from museum specimens can help us to study extinct species.

搜集汇总

背景与挑战

背景概述

该数据集包含35个灰狼基因组测序实验，使用Illumina HiSeq X Ten平台进行双端测序，旨在通过基因组方法研究中国南方灰狼的特有亚群。