RefSeq Data & Scripts for ORF dominance
收藏Figshare2022-04-07 更新2026-04-08 收录
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https://figshare.com/articles/dataset/RefSeq_Data_Scripts_for_ORF_dominance/7269500/1
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资源简介：
This is the fileset for the article "Protein-coding potential of RNAs measured by open reading frame dominance" by Y.Suenaga, et al.<br><br>This fileset consists of the datasets of human (Feb 2015 and April 2018) and 8 spicies given in the article.<br><br>[Dataset]<br>- RefSeq gzipped fasta files (data/RefSeq)<br>- Scripts to generate open reading frame (ORF) dominance score and other information from RefSeq data. (script)<br><br>[How to Run Scripts]<br>- 1. Unpack a tar.xz file.<br>- 2. Run script/01_MergeFa.sh.<br>- 3. Run script/02_ORFdominance.sh.<br>- 4. Run script/03_Format.sh<br>Under data/03_Format, you can get NM.txt and NR.txt as the result.<br><br>[Note]<br>- Scripts require Linux, bash, and perl.<br>- Scripts use randomized data. Consequently, results differ slightly for the same input data.<br>- Scripts are the same files in "Scripts for ORF dominance" (DOI: 10.6084/m9.figshare.7269518).<br><br><br>
提供机构：
Kobatake, Miho; NAGAI, Momoko; Makino, Takashi; Nakatani, Kazuma; Kato, Mamoru; Suenaga, Yusuke; Kogashi, Hiroyuki; Yokoi, Sana
创建时间：
2022-04-07
