Additional file 4 of Multi-omics provide insights into the regulation of DNA methylation in pear fruit metabolism

Additional file 4: Table S11: The DNA methylation-sequenced reads and their mapping results in flesh callus. Table S12: The transcriptome-sequenced reads of flesh calli and their mapping results in pear. Table S13: The differentially expressed genes observed between the 5'-Aza-treated and control calli. Table S14: Identification of the DEGs modified by DNA methylation. Table S15: Integrative analysis of DAMs, DEGs, and DMRs. Table S16: Expression levels of methyltransferase, RdDM pathway, and demethylase genes in pear flesh at 11 stages. Table S17: The small RNA sequenced reads and their mapping results in pear flesh. Table S18: Correlation analysis of DAMs and cytosine methylation in the promoters of DEGs. Table S19: Correlation analysis of DAMs and DNA methylation in whole genome. Table S20: Isolation of the DNA methylation-modified DEGs correlated with the DAMs between two adjacent stages. Table S21: The expression patterns of all identified proteins in pear flesh. Table S22: Primers used in this study.