Princeton Handbook for Reproducible Neuroimaging: Sample Output

This archive contains sample output files for the sample data accompanying the Princeton Handbook for Reproducible Neuroimaging. Outputs include the NIfTI images converted using HeuDiConv (v0.5.dev1) and organized according to the BIDS standard, quality control evaluation using MRIQC (v0.10.4), data preprocessed using fMRIPrep (v1.4.1rc1), and other auxiliary files. All outputs were created according to the procedures outlined in the handbook, and are intended to serve as a didactic reference for use with the handbook. The sample data from which the outputs are derived were acquired (with informed consent) using the ReproIn naming convention on a Siemens Skyra 3T MRI scanner. The sample data include a T1-weighted anatomical image, four functional runs with the “prettymouth” spoken story stimulus, and one functional run with a block design emotional faces task, as well as auxiliary scans (e.g., scout, soundcheck). The “prettymouth” story stimulus created by Yeshurun et al., 2017 and is available as part of the Narratives collection, and the emotional faces task is similar to Chai et al., 2015. The brain data are contributed by author S.A.N. and are authorized for non-anonymized distribution.