HMM code and input files

Contains data and code to run an HMM optimisation for Hermes insertion data.<br>Contains:<br>The predictors of insertion density:predictors.2016-10-06.tar.gzincludes:insertion motif similarity score (IMSS)nucleosome density scores<br>hidden Markov Model R code<br>transposon-hmm-7-cross-validation.R<br>sample config filelog.III.5A.tr-even.config.r #the code is run like so:cat transposon-hmm-7-cross-validation.R | \R --slave --args config.r input.Rda<br>We also include:<br>sample input files: all-log.and-predictors.2016-10-06.txt.Rda<br><br>Sample output files:<br>log.all-model5A.hmmresult.table.Rda<br><br>Hermes-containing read mapping scores:mapping.scores.txt.gz<br>