five

Oct2021 reference datasets for Mitohelper

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Zenodo2025-03-14 更新2026-06-04 收录
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<strong>Reference datasets (Oct 2021 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Oct2021.tsv (712,967 records) mitofish.12S.Oct2021.tsv (38,739 records) mitofish.COI.Oct2021.tsv (244,807 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
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创建时间:
2021-10-06
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