Spondweni virus and Zika virus: A scoping review of the historical-confusion literature with comparative phylogenomic verification of species distinctness

Supplementary files S1-S16 and analysis code supporting the manuscript 'Spondweni virus and Zika virus: A scoping review of the historical-confusion literature with comparative phylogenomic verification of species distinctness'. Contents: S1 PubMed search queries and retrieved records; S2 screening rules and decisions; S3 dual-algorithm agreement; S4 data-extraction table; S5 38-record core set; S6 curated sequence metadata (115 genomes); S7 curation log; S8 curated FASTA; S9 whole-genome alignment; S10 ML tree and IQ-TREE report; S11 E/NS3/NS5 gene trees; S12 AU/SH topology-test report and trees; S13 pairwise identity matrix; S14 identity summaries; S15 verified reference database; S16 analysis protocol and run summary; plus analysis_code.zip (all Python pipeline scripts). All genome sequences are public in NCBI GenBank.