Transcriptome and metabolome datasets

The raw transcriptome data contain the unprocessed reads obtained before any bioinformatics treatment, and the treatment groups can be unambiguously identified from the file names: L0 denotes log-phase cells exposed to 0 mg L⁻¹ AgNO₃, S0 denotes stationary-phase cells exposed to 0 mg L⁻¹ AgNO₃, L1 and L8 denote log-phase cells exposed to 1 and 8 mg L⁻¹ AgNO₃, respectively, and S1 and S8 denote stationary-phase cells exposed to 1 and 8 mg L⁻¹ AgNO₃, respectively. The same naming scheme is used for the metabolome data sets; metabolomic profiling was performed in both positive-ion mode and negative-ion mode, yielding two separate raw data files per sample.