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Antarctic endolithic bacterial metagenome-assembled genomes

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Zenodo2020-11-30 更新2026-05-25 收录
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Bacterial assembled genomes and annotation data from the Antarctic cryptoendolithic communities collected during the XXXI (2015-16) Italian Antarctic Expedition. The dataset consists of 4 zip archives and 3 files (comma-separated values). Here is a brief summary of their contents: <strong>MAGs: </strong>high quality (HQ) and medium quality (MQ) bacterial metagenome assembled genomes. <strong>MAGs_metadata: </strong>completeness, contamination, length, N50, GTDB classification for each MAG. <strong>MAGs_HQ_CDS:</strong> translated coding sequences for each high quality MAG. <strong>MAGs_HQ_Annotation: </strong>EggNOG annotation files. For each high quality MAG, the following files are included: eggnog.emapper.annotations: the final EggNOG annotation; eggnog.emapper.hmm_hits: list of significant hits to eggNOG Orthologous Groups eggnog.emapper.seed_orthologs: best match of each query within the best Orthologous Group (OG) reported in the eggnog.emapper.hmm_hits file<strong>.</strong> <strong>Jiangella_Antarctica: </strong><em>Candidatus Jiangella antarctica</em> representative genome (UniValnordMG_2_bin.36.fa) and the extracted ribosomal RNA genes (rRNA.fasta). <strong>Order_MSA: </strong>protein multiple sequence alignments using the 120 GTDB bacterial marker genes. These alignments were used to estimate divergence times on orders containing at least 4 CBS, for a total of 19 orders. <strong>Samples_accession</strong>: table that relates to the NCBI deposition of the shotgun metagenomes, the following info are included: NCBI Sequence Read Archive (SRA) BioProject accession numbers JGI Integrated Microbial Genomes &amp; Microbiomes site IDs N50 values Metadata <strong>Samples_metadata: </strong>geographic coordinates, temperature, relative humidity and sampling date are reported.

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Zenodo
创建时间:
2020-02-27
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