Additional file 1 of Detecting haplotype-specific transcript variation in long reads with FLAIR2

Additional file 1. HSTs identified in hybrid Castaneus x Mouse 129. Columns are as follows: 1) chromosome; 2) position; 3) reference allele; 4) alternate allele; 5) FLAIR isoform containing ENSMUSG gene id; 6) p-value of Fisher’s test; the number of reads supporting the 7) reference or 8) alternate allele in the transcript in column 5; the number of reads supporting the 9) reference or 10) alternate allele in all other transcripts of the same gene.