Analysis of CBCS publications for Open Access, data availability statements and persistent identifiers for supplementary data

General description This dataset contains some markers of Open Science in the publications of the Chemical Biology Consortium Sweden (CBCS) between 2010 and July 2023. The sample of CBCS publications during this period consists of 188 articles. Every publication was visited manually at its DOI URL to answer the following questions. 1. Is the research article an Open Access publication? 2. Does the research article have a Creative Common license or a similar license? 3. Does the research article contain a data availability statement? 4. Did the authors submit data of their study to a repository such as EMBL, Genbank, Protein Data Bank PDB, Cambridge Crystallographic Data Centre CCDC, Dryad or a similar repository? 5. Does the research article contain supplementary data? 6. Do the supplementary data have a persistent identifier that makes them citable as a defined research output? Variables The data were compiled in a Microsoft Excel 365 document that includes the following variables. 1. DOI URL of research article 2. Year of publication 3. Research article published with Open Access 4. License for research article 5. Data availability statement in article 6. Supplementary data added to article 7. Persistent identifier for supplementary data 8. Authors submitted data to NCBI or EMBL or PDB or Dryad or CCDC Visualization Parts of the data were visualized in two figures as bar diagrams using Microsoft Excel 365. The first figure displays the number of publications during a year, the number of publications that is published with open access and the number of publications that contain a data availability statement (Figure 1). The second figure shows the number of publication sper year and how many publications contain supplementary data. This figure also shows how many of the supplementary datasets have a persistent identifier (Figure 2). File formats and software The file formats used in this dataset are: .csv (Text file) .docx (Microsoft Word 365 file) .jpg (JPEG image file) .pdf/A (Portable Document Format for archiving) .png (Portable Network Graphics image file) .pptx (Microsoft Power Point 365 file) .txt (Text file) .xlsx (Microsoft Excel 365 file) All files can be opened with Microsoft Office 365 and work likely also with the older versions Office 2019 and 2016. MD5 checksums Here is a list of all files of this dataset and of their MD5 checksums. 1. Readme.txt (MD5: 795f171be340c13d78ba8608dafb3e76) 2. Manifest.txt (MD5: 46787888019a87bb9d897effdf719b71) 3. Materials_and_methods.docx (MD5: 0eedaebf5c88982896bd1e0fe57849c2), 4. Materials_and_methods.pdf (MD5: d314bf2bdff866f827741d7a746f063b), 5. Materials_and_methods.txt (MD5: 26e7319de89285fc5c1a503d0b01d08a), 6. CBCS_publications_until_date_2023_07_05.xlsx (MD5: 532fec0bd177844ac0410b98de13ca7c), 7. CBCS_publications_until_date_2023_07_05.csv (MD5: 2580410623f79959c488fdfefe8b4c7b), 8. Data_from_CBCS_publications_until_date_2023_07_05_obtained_by_manual_collection.xlsx (MD5: 9c67dd84a6b56a45e1f50a28419930e5), 9. Data_from_CBCS_publications_until_date_2023_07_05_obtained_by_manual_collection.csv (MD5: fb3ac69476bfc57a8adc734b4d48ea2b), 10. Aggregated_data_from_CBCS_publications_until_2023_07_05.xlsx (MD5: 6b6cbf3b9617fa8960ff15834869f793), 11. Aggregated_data_from_CBCS_publications_until_2023_07_05.csv (MD5: b2b8dd36ba86629ed455ae5ad2489d6e), 12. Figure_1_CBCS_publications_until_2023_07_05_Open_Access_and_data_availablitiy_statement.xlsx (MD5: 9c0422cf1bbd63ac0709324cb128410e), 13. Figure_1.pptx (MD5: 55a1d12b2a9a81dca4bb7f333002f7fe), 14. Image_of_figure_1.jpg (MD5: 5179f69297fbbf2eaaf7b641784617d7), 15. Image_of_figure_1.png (MD5: 8ec94efc07417d69115200529b359698), 16. Figure_2_CBCS_publications_until_2023_07_05_supplementary_data_and_PID_for_supplementary_data.xlsx (MD5: f5f0d6e4218e390169c7409870227a0a), 17. Figure_2.pptx (MD5: 0fd4c622dc0474549df88cf37d0e9d72), 18. Image_of_figure_2.jpg (MD5: c6c68b63b7320597b239316a1c15e00d), 19. Image_of_figure_2.png (MD5: 24413cc7d292f468bec0ac60cbaa7809)数据集概述 本数据集收录了瑞典化学生物学联盟（Chemical Biology Consortium Sweden, CBCS）2010年至2023年7月期间发表的学术论文中的开放科学相关标识。此时间段内的CBCS学术论文样本共计188篇。研究人员通过每篇论文的DOI链接手动访问原文，以回答以下六个问题： 1. 该研究论文是否为开放获取（Open Access）出版物？ 2. 该研究论文是否持有知识共享（Creative Commons）或类似许可协议？ 3. 该研究论文是否包含数据可用性声明？ 4. 作者是否将研究数据提交至EMBL、Genbank、蛋白质数据银行（Protein Data Bank, PDB）、剑桥晶体学数据中心（Cambridge Crystallographic Data Centre, CCDC）、Dryad或同类数据库？ 5. 该研究论文是否包含补充数据？ 6. 补充数据是否拥有可作为可引用研究成果的持久标识符（Persistent Identifier, PID）？ 变量说明 本数据集已整理至Microsoft Excel 365文档中，包含以下变量： 1. 研究论文的DOI链接 2. 发表年份 3. 研究论文是否以开放获取形式发表 4. 研究论文所使用的许可协议 5. 论文中包含的数据可用性声明 6. 论文是否附带补充数据 7. 补充数据的持久标识符 8. 作者是否将数据提交至NCBI、EMBL、PDB、Dryad或CCDC数据库 可视化展示 部分数据已通过Microsoft Excel 365绘制为柱状图进行可视化，共包含两幅图表。图1展示了年度发表论文总量、开放获取论文数量以及包含数据可用性声明的论文数量。图2展示了年度发表论文总量、附带补充数据的论文数量，以及其中拥有持久标识符的补充数据集数量。 文件格式与适用软件 本数据集采用的文件格式包括： .csv（文本文件）、.docx（Microsoft Word 365文档）、.jpg（JPEG图像文件）、.pdf/A（归档用便携式文档格式）、.png（便携式网络图形图像文件）、.pptx（Microsoft PowerPoint 365演示文稿）、.txt（文本文件）、.xlsx（Microsoft Excel 365电子表格）。 所有文件均可通过Microsoft Office 365打开，且大概率兼容Office 2019与Office 2016旧版本。 MD5校验值 以下为本数据集所有文件及其对应的MD5校验值： 1. Readme.txt（MD5: 795f171be340c13d78ba8608dafb3e76） 2. Manifest.txt（MD5: 46787888019a87bb9d897effdf719b71） 3. Materials_and_methods.docx（MD5: 0eedaebf5c88982896bd1e0fe57849c2） 4. Materials_and_methods.pdf（MD5: d314bf2bdff866f827741d7a746f063b） 5. Materials_and_methods.txt（MD5: 26e7319de89285fc5c1a503d0b01d08a） 6. CBCS_publications_until_date_2023_07_05.xlsx（MD5: 532fec0bd177844ac0410b98de13ca7c） 7. CBCS_publications_until_date_2023_07_05.csv（MD5: 2580410623f79959c488fdfefe8b4c7b） 8. Data_from_CBCS_publications_until_date_2023_07_05_obtained_by_manual_collection.xlsx（MD5: 9c67dd84a6b56a45e1f50a28419930e5） 9. Data_from_CBCS_publications_until_date_2023_07_05_obtained_by_manual_collection.csv（MD5: fb3ac69476bfc57a8adc734b4d48ea2b） 10. Aggregated_data_from_CBCS_publications_until_2023_07_05.xlsx（MD5: 6b6cbf3b9617fa8960ff15834869f793） 11. Aggregated_data_from_CBCS_publications_until_2023_07_05.csv（MD5: b2b8dd36ba86629ed455ae5ad2489d6e） 12. Figure_1_CBCS_publications_until_2023_07_05_Open_Access_and_data_availablitiy_statement.xlsx（MD5: 9c0422cf1bbd63ac0709324cb128410e） 13. Figure_1.pptx（MD5: 55a1d12b2a9a81dca4bb7f333002f7fe） 14. Image_of_figure_1.jpg（MD5: 5179f69297fbbf2eaaf7b641784617d7） 15. Image_of_figure_1.png（MD5: 8ec94efc07417d69115200529b359698） 16. Figure_2_CBCS_publications_until_2023_07_05_supplementary_data_and_PID_for_supplementary_data.xlsx（MD5: f5f0d6e4218e390169c7409870227a0a） 17. Figure_2.pptx（MD5: 0fd4c622dc0474549df88cf37d0e9d72） 18. Image_of_figure_2.jpg（MD5: c6c68b63b7320597b239316a1c15e00d） 19. Image_of_figure_2.png（MD5: 24413cc7d292f468bec0ac60cbaa7809）