Additional file 1 of Genetic introgression from commercial European pigs to the indigenous Chinese Lijiang breed and associated changes in phenotypes

Additional file 1: Table S1. Samples used in this study. The data include sample information, quality control data, phenotypic data. Table S2. D-statistic and f4-ratio results. The table presents D-statistic, Z-transformed D-statistic, p-value (for D-statistic), f4-ratio, ABBA and BABA values for all pig groups. Table S3. Significant EP introgression window bins in NCDP. The table presents the detected EP introgression bins and proportions in NCDP. Table S4. Significant EP introgression window bins in TIBP-E. The table presents the detected EP introgression bins and proportions in TIBP-E. Table S5. Significant EP introgression window bins in LJP. The table presents the detected EP introgression bins and proportions in LJP. Table S6. Potential indirect introgression from EP into TIBP-E. The table presents the indirect EP introgression window bins in TIBP-E, which were detected as introgression from LJP. Table S7. Potential direct introgression from EP into TIBP-E. The table presents the direct EP introgression window bins in TIBP-E. Table S8. Fisher-test of EP introgression proportion in LJL and LJM. The table presents the Fisher-test of EP introgression proportion in LJL and LJM, and the significant level that was defined as corrected p-value FDR < 0.05.