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Steinernema carpocapsae genomic variation. Steinernema carpocapsae

NIAID Data Ecosystem2026-03-09 收录

昆虫病原线虫基因组

群体遗传变异

数据链接：

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA351254 数据链接链接失效反馈

官方服务：

资源简介：

Genomic variation patterns in the entomopathogenic nematode Steinernema carpocapsae

应用场景：

创建时间：

2016-10-28

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gnomAD variants

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A list of all gnomAD variants (Karczewski et al. 2019), along with their allelic fraction and annotation as PASS-flagged or not, was obtained from a TSV file

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Additional file 7: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

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Additional Cufflinks gene and isoform annotations for S. carpocapsae . The file was generated by combining Cufflink’s transcript annotations for four developmental stages (embryo, L1, IJ, and adult) w

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Index for use with the genotyper KAGE

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Index for use with the genotyper KAGE. This index is for all variants > 0.1% allele frequency from the 1000 Genomes Project and is generated by this pipeline: https://github.com/ivargr/genotyping-benc

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Additional file 12: of Signatures of co-evolutionary host-pathogen interactions in the genome of the entomopathogenic nematode Steinernema carpocapsae

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宿主-病原体共进化

Matrices of Maximum Likelihood distances between the analysed strains of S. carpocapsae and C. briggsae. (XLSX 12 kb)

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Genes with multiple, independent, nonsynonymous acquired mutations.

群体遗传变异

基因突变分析

Variants found at greater than 5% frequency within each population.

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